Types and Tailcalls

Sun / Oracle Grid Engine - Exclusive Host Access

published on January 13, 2012

I am running a cluster on EC2 (with starcluster) and wanted my jobs to have exclusive access to nodes (i.e. only one job should run on one node at the time). I had to piece this together from different sources and now almost forgot about it again, so here it goes: First create a new parallel environment

$ qconf -ap your_pe_name

The ‘-ap’ stands for add parallel environment, see ‘qconf -help’ for a list of options. The following config file comes up, change slots to something big:

pe_name            your_pe_name
slots              1024
user_lists         NONE
xuser_lists        NONE
start_proc_args    /bin/true
stop_proc_args     /bin/true
allocation_rule    $pe_slots
control_slaves     FALSE
job_is_first_task  TRUE
urgency_slots      min
accounting_summary FALSE

Ok, so now you have created a new parallel environment. Let’s add it to a queue. Call

$ qconf -mq all.q

and add the name of your parallel environment (’your_pe_name’ above) to the section parallel environments. To submit a job using this parallel environment do

$ qsub -pe your_pe_name 4 ./your_job_file.sh

The newly submitted job will occupy 4 slots. Adjust so that it occupies all cores on the machine (if you have 8 cores use 8 instead of 4) and it should be the only job that gets run on a machine.

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